Filippova, G. N.: Genetics and Epigenetics of the Multifunctional Protein CTCF, in: Current Topics in Developmental Biology, edited by: Gerald, P. S., Academic Press, 80, 337–360, 2007.
Filippova, G. N., Fagerlie, S., Klenova, E. M., Myers, C., Dehner, Y., Goodwin, G., Neiman, P. E., Collins, S. J., and Lobanenkov, V. V.: An exceptionally conserved transcriptional repressor, CTCF, employs different combinations of zinc fingers to bind diverged promoter sequences of avian and mammalian c-myc oncogenes, Mol. Cell. Biol., 16, 2802–2813, 1996.
Gondor, A. and Ohlsson, R.: OPINION Replication timing and epigenetic reprogramming of gene expression: a two-way relationship?, Nat. Rev. Genet., 10, 269–276, 2009.
Hark, A. T., Schoenherr, C. J., Katz, D. J., Ingram, R. S., Levorse, J. M., and Tilghman, S. M.: CTCF mediates methylation-sensitive enhancer-blocking activity at the H19/Igf2 locus, Nature, 405, 486–489, 2000.
Kim, T. H., Abdullaev, Z. K., Smith, A. D., Ching, K. A., Loukinov, D. I., Green, R. D., Zhang, M. Q., Lobanenkov, V. V., and Ren, B.: Analysis of the Vertebrate Insulator Protein CTCF-Binding Sites in the Human Genome, Cell, 128, 1231–1245, 2007.
Klenova, E. M., Nicolas, R. H., Paterson, H. F., Carne, A. F., Heath, C. M., Goodwin, G. H., Neiman, P. E., and Lobanenkov, V. V.: CTCF, a conserved nuclear factor required for optimal transcriptional activity of the chicken c-myc gene, is an 11-Zn-finger protein differentially expressed in multiple forms, Mol. Cell. Biol., 13, 7612–7624, 1993.
Lonergan, P., Rizos, D., Gutierrez-Adan, A., Moreira, P. M., Pintado, B., de la Fuente, J., and Boland, M. P.: Temporal divergence in the pattern of messenger RNA expression in bovine embryos cultured from the zygote to blastocyst stage in vitro or in vivo, Biol. Reprod., 69, 1424–1431, 2003.
Luco, R. F., Allo, M., Schor, I. E., Kornblihtt, A. R., and Misteli, T.: Epigenetics in alternative pre-mRNA splicing, Cell, 144, 16–26, 2011.
Memili, E. and First, N. L.: Zygotic and embryonic gene expression in cow: a review of timing and mechanisms of early gene expression as compared with other species, Zygote, 8, 87–96, 2000.
Moore, J. M., Rabaia, N. A., Smith, L. E., Fagerlie, S., Gurley, K., Loukinov, D., Disteche, C. M., Collins, S. J., Kemp, C. J., Lobanenkov, V. V., and Filippova, G. N.: Loss of Maternal CTCF Is Associated with Peri-Implantation Lethality of
Ctcf Null Embryos, PLoS ONE, 7, e34915, https://doi.org/10.1371/journal.pone.0034915, 2012.
Pfaffl, M. W.: A new mathematical model for relative quantification in real-time RT–PCR, Nucleic Acids Res., 29, e45, https://doi.org/10.1093/nar/29.9.e45, 2001.
Pfaffl, M. W., Horgan, G. W., and Dempfle, L.: Relative expression software tool (REST©) for group-wise comparison and statistical analysis of relative expression results in real-time PCR, Nucleic Acids Res., 30, e36, https://doi.org/10.1093/nar/30.9.e36, 2002.
Pugacheva, E. M., Tiwari, V. K., Abdullaev, Z., Vostrov, A. A., Flanagan, P. T., Quitschke, W. W., Loukinov, D. I., Ohlsson, R., and Lobanenkov, V. V.: Familial cases of point mutations in the XIST promoter reveal a correlation between CTCF binding and pre-emptive choices of X chromosome inactivation, Hum. Mol. Genet., 14, 953–965, 2005.
Ramakers, C., Ruijter, J. M., Deprez, R. H., and Moorman, A. F.: Assumption-free analysis of quantitative real-time polymerase chain reaction (PCR) data, Neurosci. Lett., 339, 62–66, 2003.
Robert, C., McGraw, S., Massicotte, L., Pravetoni, M., Gandolfi, F., and Sirard, M.-A.: Quantification of Housekeeping Transcript Levels During the Development of Bovine Preimplantation Embryos, Biol. Reprod., 67, 1465–1472, 2002.
Shukla, S., Kavak, E., Gregory, M., Imashimizu, M., Shutinoski, B., Kashlev, M., Oberdoerffer, P., Sandberg, R., and Oberdoerffer, S.: CTCF-promoted RNA polymerase II pausing links DNA methylation to splicing, Nature, 479, 74–79, 2011.
Vostrov, A. A. and Quitschke, W. W.: The Zinc Finger Protein CTCF Binds to the APBβ Domain of the Amyloid β-Protein Precursor Promoter, J. Biol. Chem., 272, 33353–33359, 1997.
Wan, L.-B., Pan, H., Hannenhalli, S., Cheng, Y., Ma, J., Fedoriw, A., Lobanenkov, V., Latham, K. E., Schultz, R. M., and Bartolomei, M. S.: Maternal depletion of CTCF reveals multiple functions during oocyte and preimplantation embryo development, Development, 135, 2729–2738, 2008.
Wei, Z., Park, K.-W., Day, B. N., and Prather, R. S.: Effect of epidermal growth factor on preimplantation development and its receptor expression in porcine embryos*, Mol. Reprod. Dev., 60, 457–462, 2001.
Wrenzycki, C., Herrmann, D., Lucas-Hahn, A., Korsawe, K., Lemme, E., and Niemann, H.: Messenger RNA expression patterns in bovine embryos derived from in vitro procedures and their implications for development, Reprod. Fert. Develop., 17, 23–35, 2005.
Wrenzycki, C., Herrmann, D., and Niemann, H.: Messenger RNA in oocytes and embryos in relation to embryo viability, Theriogenology, 68, Suppl. 1, S77–83, 2007.
